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alfa

A generic tool to compute and display distribution of reads by genomic categories and biotypes

altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

biocode

Bioinformatics code libraries and scripts

bioinfo-tools

Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.

chromego

ChromeGo 翻墙工具包

chromium

Chromium browser with SSL VPN. Use this browser to unblock websites.

cnci

Coding-Non-Coding Index (CNCI)

cpc2_standalone

Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

crc_lncrna

结直肠癌lncRNA

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

feelnc

FlExible Extraction of LncRNA

ggords

Ordination Visualization

horse_trans

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

jjqqkk-chromium-

lncrna

lncrna-protein-interaction-prediction

The source codes for our paper submitted to Neurocomputing in 2017. We propose a linear label propagation method (LPLNP method) to predict unknown lncRNA-protein interactions. In this repository, you can find our dataset and code of individual LPLNP, intergrated LPLNP models, and other state-of-the-art methods. Please follow the Guideline.pdf.

lncrna-screen

lncRNA-screen

microrna-sequencing

Creation of a repository for microRNA-sequencing pipeline

mirdeep2

Discovering known and novel miRNAs from small RNA sequencing data

mirna-analysis

Skeleton for a micro RNA analysis from RNA-seq data

mirna-mrna_integration

A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq

mirna-snp

The code is to get SNPs located in miRNA/pre-miRNA and their relationship(in loop, upstream of miRNA, downstream of miRNA, seed region or just in the miRNA) miRNA data is from mirBase while dbSNP data is from vcf file

mirna_pipeline

bioinformatics pipeline to analyze micro RNA sequencing data

nf-core-rnaseq

See the main fork of this repository here >>>

perl-for-bioinformatics

An attempt to help anyone interested in using Perl for Bioinformatics

project-lncrna

rhesuslncrna

rnaseq-workflow

A repository for setting up a RNAseq workflow

rnaseq.mcf10a

"Perturbations of PIP3 signalling" paper