ACEnglish/kanpig
Kmer Analysis of Pileups for Genotyping
Repositories
ACEnglish/tdb
Tandem repeat database and analysis queries
ACEnglish/truvari
Structural variant toolkit for VCFs
ACEnglish/adotto
Working space for the GIAB TR benchmarking project
ACEnglish/bwapy
Python bindings to bwa mem
ACEnglish/stablevizer
TR instability visualization tool
ACEnglish/utmos
Maximum-coverage algorithm for genomic variants
ACEnglish/regioners
A rust implementation of regioneR for interval overlap permutation testing
ACEnglish/SVAN
Structural Variants ANnotator (SVAN)
ACEnglish/longcallD
A local-haplotagging-based small and structural variant caller
ACEnglish/vclust
A method to locate variation clusters
ACEnglish/usable_vcf
Run multiple programs to check if a VCF is usable
ACEnglish/SVAFotate
ACEnglish/laytr
Library for variant benchmarking stratification
ACEnglish/bio2zarr
Convert bioinformatics file formats to Zarr
ACEnglish/Sniffles
Structural variation caller using third generation sequencing
ACEnglish/TruvariData
Data and Scripts relevant to the development and benchmarking of truvari
ACEnglish/acebinf
Collection of simple utilities used when building bioinformatics tools
ACEnglish/mebyfrac
Leveraging Fractal-like Rules of DNA for QC
ACEnglish/wordlexp
wordle explorer
ACEnglish/paragraph
Graph realignment tools for structural variants