Andrei Riaskóv

ARyaskov/kira-spliceqc

Deterministic splicing quality control for single-cell RNA-seq

ARyaskov/kira-shared-sc-cache

Shared deterministic binary cache for Kira single-cell pipelines

ARyaskov/kira-scio

Standalone library crate for deterministic single-cell input ingestion in the Kira stack.

ARyaskov/kira_kv_engine

KV-storage engine based on Minimal perfect hash functions with hybrid indexing (+PGM Index) for Rust. Zero collisions. Pure O(1) performance.

ARyaskov/kira-ls-aligner

Unified short- and long-read sequence aligner written in Rust 2024. It combines minimap2-style minimizers and chaining with BWA-MEM2-style exact-match anchoring and output semantics. The goal is drop-in compatibility with bwa-mem pipelines while supporting long reads efficiently.

ARyaskov/kira-bio-tools

kira-bt is a high-performance toolkit for VCF/BCF processing with bcftools-oriented command-line compatibility.

ARyaskov/version-control-rs

SVN-compatible version control engine in Rust (library + CLI usage)

ARyaskov/mmap-io

Node.js addon for memory mapping files (fall-2026 version)

ARyaskov/panweave

An independent, open-source Rust implementation of IEEE 802.15.4-based Zigbee 4.0 protocol functionality for embedded and host-side systems.

ARyaskov/stepik-course-materials

ARyaskov/kira-pairs

Fast, memory-bounded Rust implementation of the performance-critical parts of the Hi-C .pairs workflow handled by pairtools

ARyaskov/kira-mmcif

Low-level, streaming mmCIF parser focused on protein coordinates. The crate reads _atom_site data and exposes a stable, Gemmi-inspired API with a deterministic, protein-oriented data contract.

ARyaskov/kira-biodata-manager

kira-bm it's like npm/cargo/pip for bioinformatics. Reproducible bio-data manager with a project-local store and a shared global cache.

ARyaskov/nevo-redox

Redox Minimal Server Distribution

ARyaskov/redox

Mirror of https://gitlab.redox-os.org/redox-os/redox

ARyaskov/redox-kernel

Mirror of https://gitlab.redox-os.org/redox-os/kernel

ARyaskov/kira-vrs

A native Rust implementation of the GA4GH Variation Representation Specification (VRS) 2.1

ARyaskov/kira-fastq

High-performance FASTQ reader with mmap-first design. Supports plain, gzip, and BGZF inputs; optional multi-line parsing; and explicit paired-end reading.

ARyaskov/nevo-messaging-rs

A powerful microservices messaging framework for Rust 2024 with NATS transport, designed for building scalable distributed systems with type-safe inter-service communication.

ARyaskov/kira-bam

High-performance BAM/SAM toolkit written in Rust 2024. Drop-in samtools-compatible CLI

ARyaskov/nevo-messaging

A powerful microservices messaging framework for NestJS 11+ with NATS/Kafka transport, designed for building scalable distributed systems with type-safe inter-service communication.

ARyaskov/kira-scg

Rust CLI for preprocessing single-cell RNA-seq count matrices.

ARyaskov/bioinf-binaries

Community builds for the main bioinformatics software - Samtools, Tabix, Bcftools, CD-HIT

ARyaskov/kira-spatial

Deterministic orchestrator crate for sequential pipeline: kira-spatial-io (read H5) kira-spatial-field (dense gene field) kira-spatial-core (derived scalar: raw / |grad| / laplacian) kira-spatial-3d (mesh, contours, stitching, metrics, exports)

ARyaskov/kira-spatial-field

kira-spatial-field is a deterministic Rust library for constructing immutable scalar fields from spatial transcriptomics expression matrices.

ARyaskov/kira-spatial-core

Deterministic, SoA-first Rust library for spatial primitives shared across Kira tools.

ARyaskov/kira-spatial-io

Deterministic Rust IO library for spatial transcriptomics datasets

ARyaskov/kira-spatial-3d

Deterministic projection crate that turns precomputed scalar fields into 3D mesh, contour, and export artifacts.

ARyaskov/kira-cluster

Deterministic Rust CLI for MMseqs2-like approximate high-throughput sequence clustering/search workflows

ARyaskov/sulfur-backend

🧪 Elixir/Phoenix-powered GraphQL Poker backend