AvantiShri/paperstorage
Place to store papers to reference from elsewhere
Former CS PhD with the Kundaje lab at Stanford, and postdoc in Earth System Science. A lot of my code is with github.com/kundajelab and github.com/nitrogenlab
Repositories
AvantiShri/gotpsi_sequentialcard
Repository for code for the Got Psi sequential card test
AvantiShri/colab_notebooks
AvantiShri/gcp_analysis_rough
For rough notebooks not ready for public consumption
AvantiShri/gcp_analysis
AvantiShri/DeepCAC
Fork of "Fully automatic coronary calcium risk assessment using Deep Learning"
AvantiShri/papers_analysisreplication
Data analysis replication for Freedman 2023 in cortex
AvantiShri/gcpdatautils
Utils for parsing data from the Global Consciousness Project
AvantiShri/BioMate
UI team BioMate, Spring 2013
AvantiShri/web
AvantiShri/model_storage
A place to store bulky models that can then be linked to from elsewhere
AvantiShri/OceanHackathon2021_MappingBlueCarbon
training a deep learning model to recognize blue carbon ecosystems from MODIS remote sensing data.
AvantiShri/pygletplay
Playing with pyglet
AvantiShri/landsatxplore
Search and download Landsat scenes from EarthExplorer.
AvantiShri/seqbatchproducers
The part of seqdataloader that I need
AvantiShri/replicate_bugs
Place for uploading data to replicate bugs
AvantiShri/py_pcha
Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.
AvantiShri/dueling_init
AvantiShri/innvestigate
A toolbox to iNNvestigate neural networks' predictions!
AvantiShri/MACS
MACS -- Model-based Analysis of ChIP-Seq
AvantiShri/avalon-card-assigner
Code to do initial Avalon card assignments, to assist in playing online (e.g. over zoom). Assumes that someone in the group knows the rules and how to set up the game.
AvantiShri/pynndescent
A Python nearest neighbor descent for approximate nearest neighbors
AvantiShri/cee162f
Coastal Processes
AvantiShri/ess151project
AvantiShri/file_hosting
hacky file hosting
AvantiShri/seqdataloader
Sequence data label generation and ingestion into deep learning models
AvantiShri/dragonn
A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
AvantiShri/colab_notebook_data
AvantiShri/ExPecto
AvantiShri/deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine