Evolutionary Biologist turned Research Software Engineer in R.
Repositories
Bisaloo/IntegratedLearner
Integrated Machine Learning for Multi-omics Classification and Prediction
Bisaloo/outbreaker2
Disease outbreak reconstruction from epidemiological and genetic data
Bisaloo/looplook
looplook is a versatile R package for target assignment and functional annotation of chromatin interactions. It leverages customizable genomic feature integration, expression‑aware refinement, and connected components clustering to prioritize biologically relevant chromatin interactions.
Bisaloo/iSEEid
Bisaloo/spatialFDA
a package to compute spatial metrics and comparing them using functional data analysis
Bisaloo/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
Bisaloo/docs
R-universe docs
Bisaloo/SpatialData.data
Bisaloo/bisaloo
Get to know me a little bit better
Bisaloo/zarr-developers.github.io
Zarr Homepage
Bisaloo/CSAMA2026
Bisaloo/anndata
Annotated data.
Bisaloo/EBImage
:art: Image processing toolbox for R
Bisaloo/ZarrArray
Bring Zarr datasets in R as DelayedArray objects
Bisaloo/SpatialData.plot
Viz. for `SpatialData`
Bisaloo/actions
GitHub Actions for the R community
Bisaloo/asymptor
R package to estimate asymptomatic cases via capture/recapture methods
Bisaloo/RBPEqBind
RBPEqBind simulates competitive binding of multiple RNA-binding proteins (RBPs) to RNA sequences using equilibrium binding kinetics.
Bisaloo/cellNexus
cellNexus: Quality control, annotation, aggregation and analytical layers for the Human Cell Atlas data
Bisaloo/anndataR
AnnData interoperability in R
Bisaloo/wSIR
Weighted Sliced Inverse Regression for spatial omics data analysis
Bisaloo/SpatialData
Bisaloo/lemur
Latent Embedding Multivariate Regression
Bisaloo/ImageArray
Bisaloo/code.bioconductor.org
Tools for browsing and searching the code behind Bioconductor packages
Bisaloo/zaro
Arrow Zarr in R
Bisaloo/sessioninfo2renv
[MIRROR from Codeberg] Convert sessioninfo output to an renv lockfile
Bisaloo/forwards.github.io
Source repository for http://forwards.github.io/, published with GitHub Pages
Bisaloo/BiocBuildReporter
helper functions to process and query Bioconductor build reports