BioEngineering PhD student at @MIT who loves to code!
Repositories
CorbanSwain/2024-Corban-Swain-MIT-BE-Doctoral-Dissertation-Public-Repository
Code, data, and document repository for the doctoral dissertation of Corban Swain entitled "Technological Innovation and Integration of Whole Brain Imaging, Olfactory Stimulation, and Correlative Microscopy in Larval Zebrafish" completed in the department of Biological Engineering at the Massachusetts Institute of Technology in September 2024.
CorbanSwain/Poem-Visualization
Abstract visualization of the energy in a poem (or any audio).
CorbanSwain/TI-Stim-Waveform-Generation
CorbanSwain/ExM-Demo-Figures
Data, code, and processing instructions for work on Expansion Microscopy protocols.
CorbanSwain/www
My personal website (built on Lanyon <- Jekyll).
CorbanSwain/Volume-Point-Picker
Guided user interface built for the annotation of volume images in MATLAB.
CorbanSwain/Phase-Space-Light-Field-Deconvolution
CorbanSwain/Custom-Multiphoton-Patterning
Convert image- or vector-based ''masks'' into command files that control 2-photon imaging software .
CorbanSwain/colour-checker-detection
Colour checker detection with Python
CorbanSwain/ZebraZoom
ZebraZoom can be used on fixed background videos to track the heads and tails of freely swimming and of head-embedded zebrafish as well as the center of mass of any kind of animal. ZebraZoom can also be used to compare populations based on kinematic parameters and on behavioral clustering. https://zebrazoom.org/documentation/docs/intro
CorbanSwain/PyCharm-Settings
CorbanSwain/Bible-Text-Formatting
CorbanSwain/Python-Utils
CorbanSwain/MATLAB-Utilities
Useful functions and classes for working in MATLAB.
CorbanSwain/Laser-Spec-Plots
CorbanSwain/mit6874.github.io
CorbanSwain/MIT-Admission-Stats-Graphics
CorbanSwain/Unix-Settings
CorbanSwain/LightField-deconvolution
CorbanSwain/CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
CorbanSwain/9.523-Prediction-of-Functional-Connectomes
CorbanSwain/tensorflow-for-poets-2
CorbanSwain/Cool-Calculator
CorbanSwain/Fall2017-20.420-PS4
Code for problem set 4 for 20.420 (MIT class).
CorbanSwain/Fall2017-20.420-PS3
Code for problem set 3 for 20.420 (MIT class).
CorbanSwain/Fall2017-20.420-PS6
CorbanSwain/Git-Tutorial
Tutorial for working with Git and GitHub.
CorbanSwain/Mailman-Scripts
Scripts and utilities for working with mailman email lists.