Ichoran/kse3
Kerr Scala Extensions for Scala 3
Repositories
Ichoran/py-atomic-shared-mem
Access shared memory in Python with atomic operations, for cases where the other sharing party requires atomicity.
Ichoran/ascent
Annotation-free Self-supervised Contrastive Embeddings for 3D Neuron Tracking
Ichoran/kerr-handwriting-fonts
TrueType fonts from the Kerr siblings' handwriting (Rex, Amber, Cliff)
Ichoran/thyme
Thyme is a microbenchmark utility for Scala. It includes Parsley, a (simple) local profiling tool.
Ichoran/kse
The Kerr Scala Extensions contain core functionality missing from the Scala standard library.
Ichoran/bioimage-mcp-server
bioimage-mcp-server gives your LLM agents high-level access to microscopy data by wrapping Bio-Formats and common image-understanding tasks in a MCP server
Ichoran/npex
NeuroPal EXtractor
Ichoran/eats-worm
Ichoran/bigtiff-consolidate
A utility to repack BigTIFF tiff files with IFDs at the end (for faster network loading with readers that want to read all headers first, like Bio-Formats / ImageJ / Fiji)
Ichoran/OpticalFlow3d
GPU/CUDA optimized implementation of 3D optical flow algorithms such as Farneback two frame motion estimation and Lucas Kanade dense optical flow algorithms.
Ichoran/FreeCAD
Official source code of FreeCAD, a free and opensource multiplatform 3D parametric modeler.
Ichoran/lif-timelapse-to-mp4
Small utility to generate reasonably high-quality MP4s from Leica software time-series.
Ichoran/pngj
PNGJ : pure Java library for high performance PNG encoding
Ichoran/directVSmonad
An exploration of direct and monadic patterns for solving nontrivial problems
Ichoran/bddicken-languages
Compare languages (by bddicken)
Ichoran/functional-antipattern
Examples of where functional programming, or a particular functional programming idiom, leads one to an antipattern. The goal is to effectively use the strengths of computers to augment our weaknesses.
Ichoran/ichoran.github.io
Discussions of and perhaps tutorials on how to write software excellently
Ichoran/Ammonite
Scala Scripting
Ichoran/almond
A Scala kernel for Jupyter
Ichoran/Westlake-DV
DV
Ichoran/metrology
Analyze animal-by-animal summary metrics from Choreography-processed output of the Multi-Worm Tracker
Ichoran/hdf5-image-medley
This repository contains small example programs of how to read and write HDF5 images in a variety of languages.
Ichoran/fastparse
Writing Fast Parsers Fast in Scala
Ichoran/mwt-core
Core image processing routines for the Multi-Worm Tracker: track hundreds of animals in real time!
Ichoran/BOSL
The Belfry OpenScad Library - A library of tools, shapes, and helpers to make OpenScad easier to use.
Ichoran/annotation_buddy
Ichoran/mwt-utilities
Utilities to help extract data from the Multi-Worm Tracker's output data, without going through a full analysis as with Choreography.
Ichoran/wishbone
Wishbone is an algorithm to align cells along developmental trajectories with branches
Ichoran/scala-collection-laws
An exploration of partially automatic generation of tests for the entire collections library.