jookuma Goto Github PK

academic-kickstart

📝 Easily create a beautiful website using Academic, Hugo, and Netlify

arboretum

Track and lineage visualization with btrack and Napari :evergreen_tree:

brs-interactive_segmentation

Won-Dong Jang and Chang-Su Kim, "Interactive Image Segmentation via Backpropagating Refinement Scheme," CVPR 2019

cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

cellpose

a generalist algorithm for cellular segmentation

cellpose-napari

napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

cityscapesscripts

README and scripts for the Cityscapes Dataset

cob

Convolutional Oriented Boundaries

coherentstructures

Algorithms for identifying coherent structures in sparse and noisy trajectory datasets

conda-forge-pinning-feedstock

A conda-smithy repository for conda-forge-pinning.

cookiecutter-napari-plugin

Cookiecutter for napari plugins

csbdeep

Image restoration for fluorescence microscopy

dexp

Dataset EXploration & Processing

differentiablesketching

Differentiable Drawing and Sketching

encfs

EncFS: an Encrypted Filesystem for FUSE.

higra

Hierarchical Graph Analysis

hrnet-semantic-segmentation

This is an official implementation of semantic segmentation for our TPAMI paper "Deep High-Resolution Representation Learning for Visual Recognition". https://arxiv.org/abs/1908.07919

huffman_tree_compression

Huffman tree compression algorithm written in C, code comments in portuguese

iohub

N-dimensional bioimaging data I/O with OME metadata in Python

jookuma.github.io

My homepage

mastodon

Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.

miccai2020_self_sup_nuclei_seg

Self-supervised nuclei segmentation (MICCAI 2020)

micro-sam

Segment Anything for Microscopy

mmsegmentation

OpenMMLab Semantic Segmentation Toolbox and Benchmark.

mo434_project

nanobind

nanobind: tiny and efficient C++/Python bindings

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-animation

A napari plugin for making animations

napari-brightness-contrast

napari-dexp