JoseEspinosa/protein_design_ai_course_ferruz
A repository with coursework material for workshops and lectures
Hi there 👋, my name is Jose I am a bioinformatician working at the cbcrg group at the CRG (https://github.com/cbcrg). I am currently a nf-core team member
Repositories
JoseEspinosa/Intro-to-probabilistic-modelling-2026
A short course on probabilistic modelling in biology aimed at PhD students and postdocs. The course covers the basics of Bayesian statistics, inductive bias, sparsity inducing priors, hierarchical modelling, VAEs, diffusion models, Bayesian experimental design and compressed sensing
JoseEspinosa/elixir_summerschool_26
JoseEspinosa/nf-core-proteinfold
Main pipeline here:
JoseEspinosa/food_addiction_analysis
JoseEspinosa/bovreg_rnaseq_tests_datasets
Test data sets to test bovreg rnaseq pipeline
JoseEspinosa/tcoffee-nextflow-pipeline
Nextflow pipeline to run T-Coffee server commands
JoseEspinosa/nf-core-modules
Main repository here:
JoseEspinosa/nf-core-tools
Main repository here:
JoseEspinosa/website
Code and files for the main nf-core website >>>
JoseEspinosa/pergola-reproduce
Wrapper of the three repositories reproducing Pergola paper analysis
JoseEspinosa/CV_long
My cv
JoseEspinosa/proposals
Fork of nf-core proposals for the main repo go:
JoseEspinosa/strict-syntax-health
Track Nextflow strict syntax linting health across nf-core pipelines
JoseEspinosa/configs
Config files used to define parameters specific to compute environments at different Institutions
JoseEspinosa/nf-core-multiplesequencealign
Fork from the nf-core multiplesequencealign pipeline: https://github.com/nf-core/multiplesequencealign
JoseEspinosa/bioconda-recipes
Conda recipes for the bioconda channel.
JoseEspinosa/edammcp
JoseEspinosa/joseespinosa.github.io
My academic website -> http://joseespinosa.github.io
JoseEspinosa/ribomsqc
QC pipeline that monitors mass spectrometer performance in ribonucleoside analysis
JoseEspinosa/docker-r-ggplot2
Docker file for plotting and more
JoseEspinosa/deepmodeloptim
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
JoseEspinosa/nf-core-chipseq
Main pipeline here:
JoseEspinosa/stats
JoseEspinosa/alphafold3
AlphaFold 3 inference pipeline.
JoseEspinosa/awesome
Awesome pipeline
JoseEspinosa/test-datasets
Test data to be used for automated testing with the nf-core pipelines
JoseEspinosa/reportho
nf-core pipeline for comparative analysis of ortholog predictions
JoseEspinosa/BovReg-Reproducibility
This repository aims to be a template to develop reproducible analyses for BovReg partners involved in bioinformatics
JoseEspinosa/nf-wrap
Nextflow wrapper built around nf-core/modules