🧬 Genomic Characterization of Sepsis Pathogens (Klebsiella pneumoniae & Escherichia coli) This repository contains bioinformatics pipelines and analysis scripts used for the genomic characterization of sepsis-associated bacterial pathogens, with a focus on Klebsiella pneumoniae and Escherichia coli isolated from bloodstream infections.
The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimicrobial susceptibility testing (AST) data, and calculating genotype-phenotype associations.
WHOMUTATIONCATALOGUEPIPELINE
Antibiotic resistance prediction in minutes
This repository is for a guessing game script that asks the user to guess the number of files in any folder