KasperSkytte/slurmjobpacker
Automatic node assignment to pack jobs on shared nodes most optimally in your slurm cluster based on their cpu:mem shape
HPC admin doing scientific computing and data science at the department of chemistry and bioscience, Aalborg University. PhD.
Repositories
KasperSkytte/github-stats
KasperSkytte/MC-prediction
Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks
KasperSkytte/dotfiles
My dotfiles for Linux, managed using chezmoi.io
KasperSkytte/tradezulu
Self-hosted trading journal AND copier (currently only for metatrader5)
KasperSkytte/setup_popos
Repo to bootstrap my working environment from a bare install
KasperSkytte/single-machine-slurm-cluster
Ansible playbook to set up a simple single-machine SLURM cluster.
KasperSkytte/teammanse
Just a fun little quiz for a private event
KasperSkytte/sstatus
SLURM cluster allocation status with colored bars
KasperSkytte/ampvis2
Tools for visualising microbial community amplicon data
KasperSkytte/doc.rustdesk.com
Document of RustDesk
KasperSkytte/hermes-ollama-truncation-fix
Fix for Hermes Desktop + Ollama 'Response remained truncated after 3 continuation attempts'
KasperSkytte/snakemake_savont
Minimalistic amplicon workflow for ONT data with ASVs generated by savont
KasperSkytte/mt5linux
MetaTrader5 for linux users
KasperSkytte/snakemake_usearch
Simple snakemake workflow based on the usearch11 SOP
KasperSkytte/BASH_template
A simple BASH template script
KasperSkytte/bioscripts
Miscellaneous bioinformatic helper scripts for various tasks
KasperSkytte/chezmoi
Manage your dotfiles across multiple diverse machines, securely.
KasperSkytte/ASV_pipeline
Bioinformatic pipeline for processing 16S rRNA amplicon data with exact Amplicon Sequence Variants (ASV's)
KasperSkytte/mmgenome2
Tools for extracting individual genomes from metagenomes
KasperSkytte/bioconda-recipes
Conda recipes for the bioconda channel.
KasperSkytte/2025-Crowdsource-GPU-basecalling-stats
A repository for collecting GPU basecalling stats
KasperSkytte/ONT-AmpSeq
Snakemake workflow to generate OTU tables from barcoded ONT data
KasperSkytte/AutoTax
Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples
KasperSkytte/rhdf5
Package providing an interface between HDF5 and R
KasperSkytte/Rhdf5lib
Distribution of the HDF5 library in an R package
KasperSkytte/ansible-role-jumpcloud
Ansible role to setup JumpCloud agent on a Linux machine
KasperSkytte/mmlong2
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
KasperSkytte/Teachable-dl
Course downloader for teachable platform written in python3 using selenium and yt-dlp
KasperSkytte/ansible-anaconda
Ansible role for installing Anaconda