Software and Machine Learning Engineer working on automation in semiconductor failure analysis
Repositories
KevinMenden/scaden
Deep Learning based cell composition analysis with Scaden.
KevinMenden/juliaml
Implementations of different algorithms to learn Julia
KevinMenden/variational-autoencoder
Implementation of a variational autoencoder model
KevinMenden/tf-activity
Workflow to identify active transcription factors from CAGE-seq data.
KevinMenden/hybrid-assembly
Pipeline for hybrid assembly using short and long reads.
KevinMenden/nanoR
R package for analysis of NanoString data
KevinMenden/findCroc
Artificial Intelligence, lab 2
KevinMenden/sensor-hub
Repository to monitor sensor data taken with a Raspberry pi.
KevinMenden/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
KevinMenden/nf-co.re
Files for the main nf-core website >>>
KevinMenden/testpipe
KevinMenden/EVE
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
KevinMenden/nf-core-testpipeline
A pipeline for testing
KevinMenden/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
KevinMenden/metadata-model-specification
QBiC's metadata model specification
KevinMenden/cageseq
CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.
KevinMenden/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
KevinMenden/mlf-core
Reproducible machine learning pipelines using mlflow.
KevinMenden/testpipeline
A small example pipeline used to test new nf-core infrastructure and common code.
KevinMenden/data-model-lib
Libraries providing functionality for the QBiC/openBIS data model
KevinMenden/bioconda-recipes
Conda recipes for the bioconda channel.
KevinMenden/tools
Python package with helper tools for the nf-core community.
KevinMenden/multi-package-containers
Testing building mulled containers for multi-requirement tools.
KevinMenden/rimod-ftd
KevinMenden/mlfcore-test
KevinMenden/test-datasets
Test data to be used for automated testing with the nf-core pipelines
KevinMenden/code4green
Repository for the code4green hackathon
KevinMenden/camera-trap
Repository containing code for a Raspberry Pi camera trap project.
KevinMenden/breakout-rl
Reinforcement learning for the game Breakout from Atari 2600