LuciMoore/open-data-registry
A registry of publicly available datasets on AWS
Repositories
LuciMoore/nibabies
fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI
LuciMoore/abcc_extra_utilities
LuciMoore/qsiprep
Preprocessing of diffusion MRI
LuciMoore/prebibsnet-altworkflows
Testing alternative preprocessing approaches in prebibsnet
LuciMoore/du-audit
disk usage audit script for filesystems that filters and sorts by specified thresholds (eg age, size, etc)
LuciMoore/BIBSnet
This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.
LuciMoore/crossotope-wrapper
LuciMoore/iterative-chirality-correction
LuciMoore/infomap-s3-wrapper
LuciMoore/brainbox-api-wrapper
wrapper to create csv file necessary for file uploads to BrainBox and run curl commands to link uploaded files to associated jsons
LuciMoore/crossotope-s3-wrapper
LuciMoore/chiralitycorrection
correct swapped left-right hemisphere labels in nnUNet segmentations from BIBSNet
LuciMoore/abcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
LuciMoore/infant-abcd-bids-pipeline
Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.
LuciMoore/dcan_rtd
LuciMoore/Lab_CoC_templates
This repository contains Code of Conduct templates for research laboratories and for science conferences.
LuciMoore/dcan-infant-pipeline
The actual pipeline code, based on hcp, for human infants
LuciMoore/EXITO_workshop
LuciMoore/python_neurobootcamp
LuciMoore/MRI_nonlinear_registration
LuciMoore/sql_workshop
LuciMoore/notebooks
Jupyter notebooks for tutorials, presentations, and machine learning projects
LuciMoore/LuciMoore.github.io
Personal website
LuciMoore/labhub
OHSU Open Science Workshop on tools and methods for building transparency within a lab
LuciMoore/project-pages
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