MMathisLab/FreelyMovingVR4Mice
code base for running DeepLabCut, unity3D, and task control with a teensy
PI @AdaptiveMotorControlLab | CEBRA | DeepLabCut | co-founder @kinematik-ai
code base for running DeepLabCut, unity3D, and task control with a teensy
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
CEBRA Demo Notebooks. Please see all of them at the URL below:
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Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
a napari plug-in for direct 3D cell segmentation on cleared tissue -- taking you through training, inference, and review of masks
Sample implementation of the MotionMapper behavioral analysis algorithms
A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond
Contains Code used in Mathis et al. 2017, DOI: http://dx.doi.org/10.1016/j.neuron.2017.02.049
Workshop material for using DeepLabCut
Notebooks and code for the 2023 EMBO course on imaging and data analysis
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
Official Open Source code for "Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity"
A repository to reconstruct cheetahs into 3D from videos
List of AI Residency Programs
Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).
Python wrapper for the IC Imaging Control SDK from The Imaging Source (TIS)
a module for kinematic analysis of deeplabcut outputs
DeepGraphPose
Example DeepLabCut projects
Taylor Swift-inspired color maps
GUI to run DeepLabCut on live video feed
Scipy Cookbook