PascalIversen/auditowl-neurips2025
AuditOwl: code and data for the NeurIPS 2025 agentic code audit
Repositories
PascalIversen/DeconfoundingFunctionalTranscriptomics
PascalIversen/AuditOwl
Prompts and tutorials for agentic scientific code review.
PascalIversen/pam_cdr_analysis
PascalIversen/LUDRP
PascalIversen/HRraffle
PascalIversen/test-datasets
Test data to be used for automated testing with the nf-core pipelines
PascalIversen/furby-office-vote
Anonymous poll: should Furby the dog come to the office? 🐶
PascalIversen/PascalIversen
PascalIversen/drevalpy
DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.
PascalIversen/Cell-Type-Specific-Graphs
PascalIversen/CODE-AE
Coherent Deconfounding Autoencoder (CODE-AE) can extract both common biological signals shared by incoherent samples and private representations unique to each data set, transfer knowledge learned from cell line data to tissue data, and separate confounding factors from them
PascalIversen/logos
Host nf-core logos and templates for making new logos
PascalIversen/LogicGDSCUtils
Preprocessing for the GDSC Database
PascalIversen/SMAC3
SMAC3: A Versatile Bayesian Optimization Package for Hyperparameter Optimization
PascalIversen/The-Python-Graph-Gallery
A website displaying hundreds of charts made with Python
PascalIversen/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
PascalIversen/pytorch_geometric
Graph Neural Network Library for PyTorch
PascalIversen/airsim_self_driving_car
Building a convolutional neural network for autonomous driving in a simple virtual environment. The virtual environment is Airsim, an open-source simulation for self-driving cars and drones. I created training data by manually driving in Airsim.
PascalIversen/mlmed_ranking
Code for the paper "Matching Anticancer Compounds and Tumor Cell Lines by Neural Networks with Ranking Loss"
PascalIversen/neural-fingerprint
Convolutional nets which can take molecular graphs of arbitrary size as input.
PascalIversen/deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
PascalIversen/gluon-ts
Probabilistic time series modeling in Python