PeterPonyu/scfm-reg-audit
Source identity, fixed-pair coverage and conditional motif-accessibility alignment audits of single-cell foundation-model gene graphs.
Repositories
PeterPonyu/wound-population-dynamics
Conditional flow matching in acute human wounds: analysis software. Public code and reproduction materials by Zeyu Fu.
PeterPonyu/wound-measurement-construct
Neural topic measurements in diabetic foot ulcer research: analysis software. Public code and reproduction materials by Zeyu Fu.
PeterPonyu/mixture-regularisation-gating
Matched cap and annealing interventions with batch-level gradient accounting for a late mixture-density regulariser.
PeterPonyu/attention-topic-collapse
Matched computational experiments and numerical diagnostics of allocation collapse in a within-cell attention topic model.
PeterPonyu/contrastive-mixture-coupling
Paired computational analysis of mixture coupling, seed sensitivity and momentum-projector behavior in a contrastive autoencoder.
PeterPonyu/mixture-geometry-prediction-audit
A twelve-dataset paired audit of cluster compactness, annotation agreement and neighborhood prediction under mixture regularisation.
PeterPonyu/topic-model-endpoint-benchmark
A sixteen-dataset analysis of annotation agreement, latent-cluster geometry and model-selection optimism in topic models.
PeterPonyu/mixture-occupancy-reliability
Refit timing, convergence and restart sensitivity of effective component occupancy in a mixture-regularised autoencoder.
PeterPonyu/momentum-topic-model-audit
Reproducible analysis of momentum-projector updates, negative queues and training-budget sensitivity in a topic model.
PeterPonyu/simplex-prior-comparison
Controlled comparisons of prior regularisation, training budget and sample holdouts in a single-cell simplex decoder.
PeterPonyu/reference-anchored-geometry
Calibration and sensitivity analysis of reference-anchored graph geometry and native probability-allocation diagnostics.
PeterPonyu/single-cell-wound-analysis
Historical collection superseded by wound-measurement-construct and wound-population-dynamics, each with its own Zenodo DOI.
PeterPonyu/spgd-tme
SPGD-TME Frontiers submission source (private backup)
PeterPonyu/trivial-arm-restoration-audit
Print the trivial arm: three scales at which a do-nothing baseline decided what an image restoration comparison could conclude
PeterPonyu/minimum-flip-set-audit
Count the gradings, not the questions: how far each conclusion of a small paired evaluation is from being overturned
PeterPonyu/discarded-pairing-reanalysis
Matched runs, unpaired test: recovering a discarded pairing in a small personalisation comparison, and pre-registering the one that would settle it
PeterPonyu/blocked-pilot-decomposition
Permission, prevalence, and the labeller: three separable reasons a chest-radiograph reporting pilot cannot answer its own question
PeterPonyu/muon-norm-cap-grokking
A causal norm cap preserves—and can accelerate—Muon grokking
PeterPonyu/wind-aware-allocation-band
From directional sensing to task completion: mapping the operating envelope of wind-aware quadrotor allocation and control
PeterPonyu/comparison-reachability-audit
Citable, obtainable, unrunnable: recording where the reconstruction of a published comparison actually stops
PeterPonyu/calibration-traps
Two pre-registered emergence negatives on small-scale testbeds. https://peterponyu.github.io/calibration-traps/
PeterPonyu/sc-novelty-reliability
PeterPonyu/PeterPonyu.github.io
Academic homepage of Zeyu Fu — single-cell computational biology
PeterPonyu/scportal
PeterPonyu/iAODE
Interpretable Accessibility ODE VAE for scATAC-seq
PeterPonyu/scccvgben-next
scCCVGBen Next.js companion explorer (auto-deployed from peterponyu/scCCVGBen webapp/)
PeterPonyu/scCCVGBen
scCCVGBen single-cell CCVGAE benchmark site and results
PeterPonyu/edit-federation-map
Code and measurements for when rank-one knowledge edits merge. Numerical archive on Zenodo.
PeterPonyu/rotcert
Angle-aware conformal certification for oriented aerial object detection: GWD nonconformity, G1 localization, G2 recall with refuse (Zenodo 10.5281/zenodo.21392293)