SichongP/EVA_Instrumentality
The lark's on the wing; The snail's on the thorn; God's in his heaven— All's right with the world!
Repositories
SichongP/FAANG_RNAseq
Transcriptomics analysis for equine FAANG
SichongP/atac-seq
Snakemake workflow for ATAC-seq analysis
SichongP/NASA_APOD_WP
Set Astronomy Picture Of the Day (APOD) as wallpaper on ubuntu
SichongP/deepTools
Tools to process and analyze deep sequencing data.
SichongP/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
SichongP/gffutils
GFF and GTF file manipulation and interconversion
SichongP/SQANTI3
Repository of SQANTI3 tool for Quality Control of Long-Read Defined Transcriptomes
SichongP/FAANG_IsoSeq
IsoSeq pipeline used in equine FAANG project
SichongP/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
SichongP/sichongp.github.io
SichongP/ezProtocol
A script writer for opentrons OT-2
SichongP/equineFAANGtrack
UCSC tracks for equine FAANG data
SichongP/2020-11-11-cmu-online
SichongP/VariantFrequency
Search for variant in ENA/SRA to determine allele frequency
SichongP/2021-03-22-genentech-online
Workshop website for March 2021 Genentech workshop
SichongP/SalmonTools
Useful tools for working with Salmon output
SichongP/2020-11-16-merck
SichongP/FAANG_ATACseq
ATACseq analysis pipeline for equine FAANG
SichongP/2020-08-03-merck-online
Data Carpentry workshop for Merck & Co., Inc.
SichongP/openrefineder
💠 + 📚 OpenRefine on Binder!
SichongP/scaffolds
WIP On-demand environments for learners who were unable to install software
SichongP/UpSetPlot
Draw UpSet plots with Matplotlib
SichongP/sambamba
Tools for working with SAM/BAM/CRAM data
SichongP/farm-notes
notes on the farm cluster
SichongP/angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
SichongP/functional-annotation
Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.