Repositories
Smeds/snakemake-executor-plugin-drmaa
A snakemake executor plugin for submission of jobs via DRMAA.
Smeds/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Smeds/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
Smeds/multiqc_cgs
MultiQC plugin that will make it possible to add more columns to general statistics table
Smeds/mkdocs_snakemake_rule_plugin
Smeds/mkdocs_yaml_schema_plugin
Smeds/gitaction_tests_repo
Smeds/arteria-core
The arteria python module is a library of helper classes for the Arteria project.
Smeds/brc-analytics
Smeds/kmtricks
modular k-mer count matrix and Bloom filter construction for large read collections
Smeds/kmindex
Index kmtricks bf matrices
Smeds/bioconda-recipes
Conda recipes for the bioconda channel.
Smeds/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
Smeds/telogator2
A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
Smeds/claude-code-hooks-multi-agent-observability
Real-time monitoring for Claude Code agents through simple hook event tracking.
Smeds/agent-os
Agent OS is a system for better planning and executing software development tasks with your AI agents.
Smeds/telomerecat
Telomerecat: The telomere computational analysis tool
Smeds/parabam
parabam
Smeds/usegalaxy-tools
usegalaxy.* common tools
Smeds/bioblend
A Python library for interacting with the Galaxy API
Smeds/galaxy
Data intensive science for everyone.
Smeds/iwc
Galaxy Workflows maintained by the Intergalactic Workflow Commission
Smeds/misc_documentation
Smeds/vgp-phase1
repository for materials to do with the VGP phase 1 data freeze, analyses, and publication
Smeds/hubtrack
Smeds/Hands-On-Large-Language-Models
Official code repo for the O'Reilly Book - "Hands-On Large Language Models"
Smeds/galaxy-job-config-init
Modules and scripts for bootstrapping Galaxy job configuration files.