Steven-N-Hart/CONCH-fork
A vision-language foundation model for computational pathology - Nature Medicine
Repositories
Steven-N-Hart/DualBalanceDistricting
A deterministic alternative to gerrymandering.
Steven-N-Hart/HistomicsTK
A Python toolkit for pathology image analysis algorithms.
Steven-N-Hart/digital_slide_archive
The official deployment of the Digital Slide Archive and HistomicsTK.
Steven-N-Hart/TRIDENT
Toolkit for large-scale whole-slide image processing.
Steven-N-Hart/HistomicsUI
A Girder plugin for pathology image annotations and analysis.
Steven-N-Hart/WSI-Classification
Steven-N-Hart/DoubleDescent
Survival Double Descent: Stress-Testing Generalization in Time-to-Event Models
Steven-N-Hart/dicom_wsi
Converts whole slide images to DICOM format
Steven-N-Hart/BRCA-ML
Prediction of the functional impact of missense variants in BRCA1 and BRCA2 with BRCA-ML
Steven-N-Hart/UnderTheRadar
Mouse Jiggler and Keystroke emulator to keep your status active
Steven-N-Hart/P-CEAD
Steven-N-Hart/CARE_Agent
Steven-N-Hart/Reinforcement-Learning-Maze
Various ways to learn a computer to escape from a maze. From random walk to a simple neural network.
Steven-N-Hart/CAVA
Steven-N-Hart/MiniPath
A tool for processing and analyzing digital pathology images stored in DICOM format.
Steven-N-Hart/dpfm_factory
Steven-N-Hart/DigiPath_MLTK
Steven-N-Hart/SpliceAI
A deep learning-based tool to identify splice variants
Steven-N-Hart/General-OneShot
Steven-N-Hart/Ganomaly
Steven-N-Hart/POC-GEN
Repo for working on dockerfiles for ONT software
Steven-N-Hart/CAPQ-TCGA
Steven-N-Hart/vcf-miner
VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
Steven-N-Hart/falsecolor
FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytoplasmic stain) to the traditional H&E histopathology color space.
Steven-N-Hart/Re-stained_WSIs_Registration
Re-stained whole slide image alignment
Steven-N-Hart/openslide-docker
This repo contains the installation procedures for an openslide environment on ubuntu
Steven-N-Hart/interop
General discussion of topics related to interoperability