Tom-TBT/wsi2zarr
Extract lossy compressed data from various WSI formats and export chunks to a Zarr layout
Biologist for computer scientists Computer scientist for biologists
Repositories
Tom-TBT/libjpeg-turbo
Main libjpeg-turbo repository
Tom-TBT/openslide
C library for reading virtual slide images
Tom-TBT/jpegtran
jpegtran fork with significant performance improvements
Tom-TBT/bioformats2raw
Bio-Formats image file format to raw format converter
Tom-TBT/jpeg_split
Splits JPEGs without decompressing/recompressing
Tom-TBT/blosc-java
Tom-TBT/bioformats2raw-docker
Bio-Formats image file format to raw format converter
Tom-TBT/conda-bioformats2raw
Bio-Formats image file format to raw format converter
Tom-TBT/ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
Tom-TBT/obook
OBO Organized Knowledge: Training materials for becoming an OBO engineer
Tom-TBT/omero-py
Python project containing Ice remoting code for OMERO
Tom-TBT/rse-ai-position-statement
Position statement on AI in the RSE workplace - generated from a BoF at RSECon 2025
Tom-TBT/omero-figure
An OMERO.web app for creating Figures from images in OMERO
Tom-TBT/omero-web-inplace-importer
An OMERO Web App for in place import
Tom-TBT/OctoPlot
Web app to use 3D printer as a 2D plotter via OctoPrint
Tom-TBT/ZarrReader
Tom-TBT/ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Tom-TBT/ansible-role-omero-server
Installs and configures OMERO.server
Tom-TBT/ome-ngff-tools
Document available viewers and other tools for the OME-NGFF image format
Tom-TBT/named-stars
Named stars flashcard deck for Anki using Brain Brew
Tom-TBT/MicroscopyNodes
Loading and handling microscopy data in blender
Tom-TBT/parade-crossfilter
Prototype OMERO.parade implementation using crossfilter.js
Tom-TBT/ome-resources-monitor
Tom-TBT/viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Tom-TBT/ezomero
A module with convenience functions for writing Python code that interacts with OMERO.
Tom-TBT/ymia_python_event_series_material
This repository offer access to teaching material and useful resources for the YMIA - Python-Based Event Series.
Tom-TBT/fbbi
Biological Imaging Methods ontology repository
Tom-TBT/OMERO.openlink
An OMERO.web app for sharing data and prepare data for web download