TomKellyGenetics/leiden
Implementation of the Leiden algorithm called by reticulate in R. (CRAN)
Bioinformatician. Alumni @mikblacklab Otago, @minoda-lab RIKEN & @hugp-ri. The @carpentries instructor. Genomics | Health | Math | Stats | AWS Dev
Repositories
TomKellyGenetics/graphsim
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
TomKellyGenetics/presize
Precision Based Sample Size Calculation
TomKellyGenetics/vioplot
Development version of vioplot R package (CRAN maintainer)
TomKellyGenetics/GBS-TaFFE
Analysing RE-RRSeq with GTDB taxonomic framework
TomKellyGenetics/info.centrality
R package: Extensions to iGraph for Information Centrality
TomKellyGenetics/tktools
Personal Repository of functions, tools, tweaks, aliases, and settings. R functions documented in package.
TomKellyGenetics/MultilayerGraphs.jl
A Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs.
TomKellyGenetics/hicup-plus
Hi-C data processing pipeline (with Dragen and HiSAT2 aligners)
TomKellyGenetics/hello-github
Evidence that GitHub contributions are a worthless measure of programming competency or work ethic
TomKellyGenetics/R-Heatmap-Functions
Modifications to the R function heatmap.2 {gplots}
TomKellyGenetics/snow
:exclamation: This is a read-only mirror of the CRAN R package repository. snow — Simple Network of Workstations
TomKellyGenetics/Rmpi
:exclamation: This is a read-only mirror of the CRAN R package repository. Rmpi — Interface (Wrapper) to MPI (Message-Passing Interface). Homepage: http://fisher.stats.uwo.ca/faculty/yu/Rmpi/
TomKellyGenetics/Gviz
This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
TomKellyGenetics/seurat
R toolkit for single cell genomics
TomKellyGenetics/plot.igraph
R package: Extensions to iGraph for Custom Plots (integrated into graphsim CRAN package)
TomKellyGenetics/vioplotx
A development version of the vioplot R package. This has been migrated to "vioplot" as version 0.3.
TomKellyGenetics/rockstar
The Rockstar programming language specification
TomKellyGenetics/rtracklayer
R interface to genome annotation files and the UCSC genome browser
TomKellyGenetics/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
TomKellyGenetics/universc
UniverSC: a flexible cross-platform single-cell data processing pipeline
TomKellyGenetics/dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
TomKellyGenetics/nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
TomKellyGenetics/demultiplex
UNDER CONSTRUCTION: Demultiplexing pipeline for Illumina sequencing data
TomKellyGenetics/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
TomKellyGenetics/MeRIPtools
TomKellyGenetics/.github
Files for the @nf-core GitHub organisation
TomKellyGenetics/python-ecology-lesson
:page_with_curl: Data Carpentry Python lessons on ecology.
TomKellyGenetics/bioc-rnaseq-ja
repository created automatically based on translations. Please submit Issues and PRs to https://github.com/swcarpentry-ja/i18n
TomKellyGenetics/bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor