PhD Student in ML for Protein Design | CSE @ UW | Protein & Enzyme Design
Repositories
Ubiquinone-dot/neetcode-submissions
My NeetCode.io problem submissions
Ubiquinone-dot/pipelines-denoise
Ubiquinone-dot/the-tensor-collective
Ubiquinone-dot/denoising-a-protein
Interactive explorable explanation of EDM diffusion + flow matching for protein design
Ubiquinone-dot/robbie-cse571
Ubiquinone-dot/mace-tutorials
Ubiquinone-dot/cool-website
Ubiquinone-dot/amorphous-flow-matching
Ubiquinone-dot/icl_reproduction_nlp_win25
Ubiquinone-dot/div-by-zero-forked
Ubiquinone-dot/TFModels
Ubiquinone-dot/DigitRecognizer
For kaggle competition on MNIST classification
Ubiquinone-dot/BraTS
Ubiquinone-dot/chemistry-ai-research-team
Developement code for orchestrating LLMs to do research for you. Designed for computational amorphous chemistry, using machine learning pair potentials
Ubiquinone-dot/llms-for-lammps
Uses llms to design experiments to submit to lammps. Runs repeatedly to get toward some structure.
Ubiquinone-dot/General
Contains different packages for random specific use cases
Ubiquinone-dot/torchdyn
A PyTorch library entirely dedicated to neural differential equations, implicit models and related numerical methods
Ubiquinone-dot/FLAIR-onboarding
Ubiquinone-dot/oai-plugin-test
Ubiquinone-dot/awesome-molecular-generation
Awesome papers related to generative molecular modeling and design.
Ubiquinone-dot/python-ace-interface
A simple set of scripts for interfacing with the Julia code required to compute ACE (Atomic Cluster Expansion) descriptors (See ACEsuit for original Julia code: https://github.com/ACEsuit/ACEpotentials.jl))
Ubiquinone-dot/simple-quantum-models
Ubiquinone-dot/ttc-ai-research-team
Code for writing blog posts for thetensorcollective.com
Ubiquinone-dot/side-aideas
Ubiquinone-dot/Dynamic-Protein-Viewer
Provides interface for displaying changes to 3d protein structures.