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ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
Scaling Single Cell Analysis to Millions of Cells
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
A book covering the fundamentals of data visualization
Tissue specific network for GTEx tissue data (TPM normalized).
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
Bostongene cell deconvolution algorithm from RNAseq
R package for integrating and analyzing multiple single-cell datasets
Python package (compatible with SCope) to create .loom files and extend them with other data e.g.: SCENIC regulons
MetaTiME: Meta-components in Tumor immune MicroEnvironment
NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)
Data-driven Network-based Bayesian Inference of Drivers
R package for Protein activity analysis of single-cell RNAseq.
pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Run Rstudio Server in a conda environment
My Rstudio cloud project.
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
Analysis of cell-cell communication at single-cell resolution
A list of scRNA-seq analysis tools
R toolkit for single cell genomics
Dataset distribution for Seurat
Scalable Tool for Gene Network Reverse Engineering
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.