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alpine-base

Alpine s6-overlay base image

ansible-certbot

ansible-galaxy

An Ansible role for managing a Galaxy server

ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

ansible-gie-proxy

Ansible Role for setting up the Node.js proxy for Galaxy Interactive Environments/Tools

ansible-tiaas2

Ansible role for deploying TIaaS2

api-php-client-ee

apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

apollo_migration

Some scripts for migrating an apollo 1 server to apollo 2

askomics

AskOmics is a visual SPARQL query builder for RDF database.

assetic

Asset Management for PHP 5.3

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bioblend

A python library for interacting with CloudMan and Galaxy API

bioconda-recipes

Conda recipes for the bioconda channel.

biomaj2galaxy

BioMAJ post processes to manipulate Galaxy tool data tables

biopython

Official git repository for Biopython (converted from CVS)

cargo-port

cache packages permanently

ceterach

An interface for interacting with MediaWiki

chado-jbrowse-connector

expose chado as a JBrowse compatible REST API

chado-schema-builder

compiles copies of the Chado database and dumps the SQL for use in other tools.

combotrackselector

Plugin to allow the co-existence of the Hierarchical and Faceted Track Selectors in the GMOD JBrowse Genome Browser

command-engine

Scripts which handle the automated conversion of a library to a command line tool suite

conda

OS-agnostic, system-level binary package manager and ecosystem

conda-build

Commands and tools for building conda packages

conda-training

Conda repository for training

configs

Config files used to define parameters specific to compute environments at different Institutions.

dgenies

Dotplot large Genomes in an Interactive, Efficient and Simple way

docker-apollo

:whale: Apollo 2.X Docker Image

docker-apollo-report

A docker image to generate regular annotation reports from an Apollo instance

docker-aureme-wiki

A docker image for mediawiki for Aureme