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absartalat Goto Github PK

followers: 0.0 following: 3.0 repos: 11.0 gists: 0.0

Name: Absar Talat

Type: User

Company: Aligarh Muslim University

Bio: Currently working as a PhD student in Medical microbiology and molecular biology lab, Interdisciplinary Biotechnology Unit, Aligarh Muslim University

Location: India

Absar Talat's Projects

abricate icon abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

iupacpal icon iupacpal

Tool to Locate Inverted Repeats in DNA Strings

kleborate icon kleborate

For ST typing, Capsular typing of K.pneumoniae and Ab resistance

kraken-biom icon kraken-biom

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

plasclass-1 icon plasclass-1

A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781

plasflow icon plasflow

Software for prediction of plasmid sequences in metagenomic assemblies

rgi icon rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

scapp icon scapp

SCAPP is a plasmid assembly tool. A preprint describing this tool is available at: https://www.biorxiv.org/content/10.1101/2020.01.12.903252v1

snippy icon snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

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