Name: Absar Talat
Type: User
Company: Aligarh Muslim University
Bio: Currently working as a PhD student in Medical microbiology and molecular biology lab, Interdisciplinary Biotechnology Unit, Aligarh Muslim University
Location: India
Absar Talat's Projects
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
A robot powered training repository :robot:
Tool to Locate Inverted Repeats in DNA Strings
For ST typing, Capsular typing of K.pneumoniae and Ab resistance
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781
Software for prediction of plasmid sequences in metagenomic assemblies
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
SCAPP is a plasmid assembly tool. A preprint describing this tool is available at: https://www.biorxiv.org/content/10.1101/2020.01.12.903252v1
:scissors: :zap: Rapid haploid variant calling and core genome alignment
SPAdes Genome Assembler