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shovill

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

sickle

Windowed Adaptive Trimming for fastq files using quality

sllobs-biostats

snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

snp_finder

snp_pipeline

Pipeline for reference-based variant (SNP/indels) calling from raw data to phylogeny.

snpfilt

A package to identify SNPs using reference-free assembly

so-ontologies

Collect of SO Ontologies

standard-raxml

startbootstrap-creative

A one page HTML theme for creatives by Start Bootstrap

stat115

This is the course notes for STAT115/215 BIO/BST282 at Harvard University.

statapps

Small web apps that illustrate statistical concepts

superdca

SuperDCA for genome-wide epistasis analysis

teaching-ibioic-intro-to-bioinformatics

Course materials for the IBioIC Introduction to Bioinformatics training course

teachingmaterial

Various teaching material

teachingmaterial1

RNA-seq data analysis practical

test-datasets

Test data to be used for automated testing with the nf-core pipelines

test-repo

repo will be linked to r

testing

A repository that would be linked with RStadio

testing1

A repository that would be linked with RStudio

testing11

repository to be linked to rstudio

the-world-of-faculty

resources for faculty

thesis

A LaTeX document class that conforms to the Computer Laboratory's PhD thesis formatting guidelines.

tnseq-pipe

TnSeq data processing workflow

tooloverview

summary of available plant genomics tools

uk_biobank_gwas

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

unitig-caller

Methods to determine sequence element (unitig) presence/absence

vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

zevrtricks

Next Gen Seq and Plotting

zotero-scihub

A plugin that will automatically download PDFs of zotero items from sci-hub