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Generalized Snakemake workflow for R.4Cker
Docker of 4Cseqpipe
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
ENCODE ATAC-seq pipeline
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Bioinformatics analysis scripts, workflows, general code examples
Application for making ENCODE Blacklists
Given FASTA, ORF annotation, and transcript annotation, generate annotations useful for other pipelines, and a GC% coverage track.
Build a custom BSgenome/TxDb R package
ChIP-seq DC and QC Pipeline
ChIP-seq analysis notes from Ming Tang
ChIP-Seq Pipeline implemented using Nextflow
ENCODE ChIP-seq pipeline
:dart:ChIP peak Annotation, Comparison and Visualization
Comparison of differential chip seq methods and rewriting/porting code along the way.
AQUAS TF and histone ChIP-seq pipeline
Integrated analysis and visualization of ChIP-seq data using ChIPpeakAnno, GeneNetworkBuilder and TrackViewer
A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on cipher.readthedocs.io, it is currently out of date. Follow information in README.
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
CRUK Bioinformatics Workshop September 2017
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
Repository for CSAMA 2016 course material
Scripts in "Differential Analysis of Chromatin Accessibility and Histone Modifications for Predicting Mouse Developmental Enhancers, Fu et al."
A Course on designing high-throughput experiments
A Feature Density Estimator for High-Throughput Sequence Tags
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/FourCSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=FourCSeq.
Plot Expression Profiles for Fused Genes
Generalized irreproducbile discover rate
Instructions and files for #GLBIOCCBC16 Workshop 2, "Jupyter Notebooks for Performing and Sharing Bioinformatics Analyses"
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.