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Name: Amanda Clark
Type: User
Company: University of Alabama at Birmingham
Bio: Postdoctoral Fellow, University of Alabama at Birmingham
Twitter: Dr_AClark
Location: Alabama
Name: Amanda Clark
Type: User
Company: University of Alabama at Birmingham
Bio: Postdoctoral Fellow, University of Alabama at Birmingham
Twitter: Dr_AClark
Location: Alabama
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Git introduction for Auburn University Bioinformatics Bootcamp
Homework 3 for Scripting for Biologists course at Auburn University
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)
testing out github with Bailey
Code to reproduce the results from decoupleR's manuscript
Package to benchmark methods from decoupleR
This repository contains all scripts used to perform reference-guided genomic assembly from paired end sequence reads and screen for contaminants as was done in Clark et al. 2021. These scripts are designed to assemble the genomes for two strains of Daphnia pulicaria using Daphnia pulex (PA42) as a reference. This repository presents a simplified workflow/pipeline to run these analyses on a supercomputer and are separated into two parts, reference-guided genomic assembly and contamination screening.
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
General tools for genomic analyses.
Grab-N-Go Genomes Setup Information
Scripting for Biologists
Homework 6 for Scripting for Biologists
Over 230 terminal color schemes/themes for iTerm/iTerm2. Includes ports to Terminal, Konsole, PuTTY, Xresources, XRDB, Remmina, Termite, XFCE, Tilda, FreeBSD VT, Terminator, Kitty, MobaXterm, LXTerminal, Microsoft's Windows Terminal, Visual Studio, Alacritty
Learning Python by translating RNA sequences.
Learning Python by translating RNA sequences
Miscellaneous scripts I find useful
R package for querying the OMIM database
Community Project featuring local Birmingham Business Owners. Built from: »Feeling Responsive« is a free flexible theme for Jekyll built on Foundation framework.
sample repository for course github demos
Repo for all things homework and coding practice for course (Scripting for Biologists-Sp19) at Auburn University
Tutorial Inspired by Frank McCowan's (https://sites.harding.edu/fmccown/r/) website for Auburn University's Intro to Computational Biology
Code from monthly stats club in the Lasseigne Lab
Transcript assembly and quantification for RNA-Seq
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.