adrianbzg Goto Github PK

bigscale2

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

biolitmap

Code for the paper "BIOLITMAP: a web-based geolocated, temporal and thematic visualization of the evolution of bioinformatics publications", Bazaga et al. (2018). Accepted in Oxford Bioinformatics. doi:10.1093/bioinformatics/bty967

biotestmine

An example InterMine - for demoing and testing

bluegenes

A friendly next-generation interface for Genomic data discovery powered by InterMine

bluegenes-depmap-cnv-visualizer

Visualizer for DepMap Copy Number Variation data per lineage for BlueGenes

bluegenes-depmap-expression-visualizer

Visualizer for DepMap mRNA expression data per lineage for BlueGenes

bluegenes-depmap-screens-visualization

bluegenes-protein-atlas-tissue-expression-visualizer

bluegenes-protein-visualizer

bluegenesprotvista

wrapper around the uniprot protvista protein feature viewer

boto

For the latest version of boto, see https://github.com/boto/boto3 -- Python interface to Amazon Web Services

build-your-own-x

🤓 Build your own (insert technology here)

caffe

Caffe: a fast open framework for deep learning.

cancertargetprediction

Code for the manuscript "Genome-wide investigation of gene-cancer associations for the prediction of novel therapeutic targets in oncology"

cbioportal

cBioPortal for Cancer Genomics

chuchuplusplus

Chuchu++ is a language/grammar built using PEGjs as parser and with it's own code generator, for the Language Processors subject

compromise

modest natural-language processing in javascript

concrete-autoencoders

conway_game-of-life

John Conway's Game of Life implementation (cellular automaton), with GUI. Language: Java. More info: https://en.wikipedia.org/wiki/Conway%27s_Game_of_Life

corenlp

Stanford CoreNLP: A Java suite of core NLP tools.

curatedmetagenomicdata

Curated and processed metagenomic data through ExperimentHub

dabestr

Data Analysis with Bootstrap Estimation in R

datacleaner

The premier open source Data Quality solution

dca

Deep count autoencoder for denoising scRNA-seq data

deck.gl

WebGL2 powered geospatial visualization layers

deeplearning-biology

A list of deep learning implementations in biology

deepspeech

A TensorFlow implementation of Baidu's DeepSpeech architecture

deepsurv

DeepSurv is a deep learning approach to survival analysis.

design_patterns_example_codes

This repo stores the Java codes and UML diagrams of the examples used for the lecture about "Design Patterns" by Adrián Rodríguez Bazaga and Rudolf Cicko, in University of La Laguna (Monday 28 March 2016)

detectron

FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.