adrisede Goto Github PK

awesome-cheatsheets

👩‍💻👨‍💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bamtobw

Convert BAM files to bigWig files with a simple command

bxtools

Tools for analyzing 10X Genomics data

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

colorway

Functions for colors in R

cranwhales

d3

A JavaScript visualization library for HTML and SVG.

deep-learning-with-r-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

docker

🐳 🍺 🐧 Dockerfiles for running Homebrew on Linux on various distros

drukbam

fastq-pair

Match up paired end fastq files quickly and efficiently.

gallery_param_vs_projections

How embedding parameters affect different projection methods (tSNE, UMAP,etc).

gotrack

gotrackweb

graybuck2019analysis

Analysis scripts used for Graybuck, et al. (2019)

happy-git-with-r

Using Git and GitHub with R, Rstudio, and R Markdown

kent

UCSC Genome Browser source tree. Stable branch: "beta".

learning_bam_file_davetang

Learning the Sequence Alignment/Map format

lookup

Lookup R full function definitions, including compiled code, S3 and S4 methods.

lowcat

Low coverage accessibility and transcriptomics

manipulate-xml-with-purrr-dplyr-tidyr

Example of taming XML with nested data frames and purrr

miller

Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

mutsneedle

oneliners

Useful bash one-liners for bioinformatics.

pbbioconda

PacBio Secondary Analysis Tools on Bioconda

purrr

A functional programming toolkit for R