Comments (4)
We use Hail to load and manipulate the data.
But to pass the data to VariantSpark we transform it into a genotype matrix using mt.GT.n_alt_alleles()
from variantspark.
Hello. Can send the documentation over for that function in python?? Unless is it part of 'hail'?
from variantspark.
That is Hail
from variantspark.
ok understood
from variantspark.
Related Issues (20)
- Additional support for prediction HOT 1
- Update the Cloud Marketplace example Notebooks to include logistic regression covariates HOT 1
- Make the covariate calculation part of RF HOT 3
- Improve release and versioning HOT 1
- Grid Search for Parameter Optimisation HOT 1
- add p-value calculation to HAIL implementation
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- Migrate to Spark 3.1 HOT 1
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- Add split variable count to hail output
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- HADOOP ERROR SERVICE AWS.... HOT 9
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- fit_trees() unable to run due to IncompatibleClassChangeError HOT 2
- Reporting a vulnerability
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- Install on any machine throws ``` java.lang.IncompatibleClassChangeError``` HOT 1
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