agreic/agreic
Config files for my GitHub profile.
Repositories
agreic/cellpose
Cellpose fork, supplemented with scripts and changes to allow more efficient usage.
agreic/byotrack
A fast & modular Python framework for biological object tracking in 2D and 3D microscopy.
agreic/skeleplex-v2
agreic/ultrack
Cell tracking and segmentation software - personalized for efficient running
agreic/sam3
Fork of Meta's Segment Anything Model 3. Used for biological inference / training.
agreic/trackastra
Transformer-based cell tracking for live-cell microscopy
agreic/Endstate
Comet AI Hackathon project
agreic/SynBioGuard
RWG Hackathon code repo
agreic/Kitaoka
Self-made implementation of the Kitaoka et al, 1999 model for making synthetic lungs.
agreic/CellProfiler
An open-source application for biological image analysis
agreic/model-runner
Runner for torch models
agreic/cell-classification
A 3D cell classification model project that relies exclusively on information extracted from nuclei images.
agreic/connect4
Connect4 Game + RL
agreic/Snake
Creating a simple game of Snake in Python using Matplotlib and Numpy libraries.