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awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

colabdesign

Making Protein Design accessible to all via Google Colab!

convnet-benchmarks

Easy benchmarking of all publicly accessible implementations of convnets

deeplearning-biology

A list of deep learning implementations in biology

deeppurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

deepsimdef

deepSimDEF offers single- and multi-channel deep learning models for functional analysis of genes using Gene Ontology annotations of gene products (RNAs, proteins, etc).

drkg

A knowledge graph and a set of tools for drug repurposing

fiddle

Flexible Integration of Data with Deep LEarning

gpss

Gaussian process material for summer school teaching.

imagene

incubator-mxnet

Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more

ipython-in-depth

IPython in-depth Tutorial, first presented at PyCon 2012

kaldi

This is now the official location of the Kaldi project.

numerical-linear-algebra

Free online textbook of Jupyter notebooks for fast.ai Computational Linear Algebra course

nvidia-docker

Build and run Docker containers leveraging NVIDIA GPUs

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

pytorch-tutorial

PyTorch Tutorial for Deep Learning Researchers

pytorchtextclassificationcustomdataset

In this repository i explain how you can implement a text classifier on custom dataset using PyTorch

seq2seq

A general-purpose encoder-decoder framework for Tensorflow

simdef

simDEF is an NLP-based model for gene function analysis using Gene Ontology annotations of gene products and proteins.

snorkel

A training data creation and management system focused on information extraction

tensor2tensor

A library for generalized sequence to sequence models

tensorflow

Computation using data flow graphs for scalable machine learning

tensorflow-examples

TensorFlow Tutorial and Examples for beginners

the-incredible-pytorch

The Incredible PyTorch: a curated list of tutorials, papers, projects, communities and more relating to PyTorch.

tornado

The Tornado :tornado: framework, designed and implemented for adaptive online learning and data stream mining in Python.