aimed-lab Goto Github PK

aimed-lab.github.io

biomedical-data-science

This repository contains materials, case studies, and project overview discussed during INFO 703/603 course by Dr. Jake Chen at UAB

dema

gene-prioritization

Gene prioritization based on network biology tools

geneterrain-web-app

happi-database

hip2

An online database of human plasma proteins from healthy individuals

homer

A human organ-specific molecular electronic repository

pager-web-app

polar-gini-curve

This is the source code for manucript Nguyen, T.M., Jeevan, J.J., Xu, N. and Chen, J.Y., 2021. Polar Gini Curve: a technique to discover gene expression spatial patterns from single-cell RNA-seq data. Genomics, Proteomics & Bioinformatics, 19(3), pp.493-503.

proteolens

A visual analytic tool for multi-scale database-driven biological network data mining

seas

Statistical Enrichment Analysis of Samples (SEAS): a general-purpose tool to annotate metadata neighborhoods of biological samples

winner

This is the source code for manuscript: Nguyen, T. et al. Gene Prioritization in Network Biology with WINNER. The code rank the most important genes in a gene lists (seed genes) using their interactions, also expandable to non-seed (expanded) genes.