Hi there!

Mutability adjusted proportion singleton: Post Graduate Research Student Position at Analytic & Translational Genomic Unit

https://github.com/atgu/BroadIS (forked)

Nextflow DSL2 pipeline: Uniformal bulk RNA-seq approach with the end goal of differential gene expression analysis

https://github.com/ajandria/futuriandge

R Package: incorporated into the Nextflow pipeline via Docker container for downstream analyses and interactive HTML report generation

https://github.com/ajandria/futuriandgeDownstream

WIP:

R/Shiny application with aggregated modules for DGE result exploration
scRNA-seq applications

Adrian Janucik's Projects

fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

This is a personal project focused on creating uniformal pipeline for processing RNA-seq data with the end goal to create a .Rdata object which can be imported into R/Shiny app for downstream analysis and hypothesis testing.

genotyping-qc-pipeline

Scripts and General Pipeline for QC-ing genotyping data

multi-package-containers

Testing building mulled containers for multi-requirement tools.

olinkrpackage

Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.