Name: Ajasja Ljubetič
Type: User
Company: Research Assistant Prof., National Institute of Chemistry, Slovenia & Bakerl Lab, UW
Bio: Making a completely de-novo designed random protein walker/roller. Also coiled-coil protein origami and stable HB-net dimeric building blocks.
Twitter: AjasjaLjubetic
Location: Ljubljana
Ajasja Ljubetič's Projects
Scripts to run AF2 with slurm integration
Submit AlphaFold colab batch jobs to slurm
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
A small logging utility
Declarative statistical visualization library for Python
A VMD script to calculate side-chain and backbone dihedrals (torsion angles)
Design platform for creating single-chain polyhedral cages made from coiled-coil building modules
Repository for the ownCloud Desktop Syncing Client
A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.
Scripts and data deposition for de novo heterodimers manuscript
Calculate position-dependent diffusion coefficients in one and two dimensions from collective variables trajectories.
Hosting for various files needed in notebooks and online examples
Program to calculate alpha-helical propensities
Script to calculate RMSD between symmetric homo-oligmoers
Regulation of proteins using coiled-coils
Intelligent System for Analysis, Model Building And Rational Design.
Intelligent System for Analysis, Model Building And Rational Design of biomolecules.
Jupyter desktop application (runs a jupyter notebook server and a chromium instance).
A demo of reordering item in a TListview (Delphi)
Lennard-Jones MD code in C for teaching purposes
Collaborative development of OpenCL version of LJMD by Axel K.
Scripts to align various channels based on reference beads.
Data and analysis code for MP3-Seq
D3 Renderings of Matplotlib Graphics
A TCL templatng system for use with the molecular dynamics program NAMD.
Open an IPython notebook in the best available server
Batch-run Jupyter IPython notebooks optionally passing arguments.
Code accompanying the article "A Multiplexed Bacterial Two-Hybrid for Rapid Characterization of Protein-Protein Interactions and Iterative Protein Design"