ajcardenasb Goto Github PK

16s_workflow_cardenas

aiptasia_microbiome_manipulation

aiptasia_salinity_thermotolerance_16s

ajcardenasb.github.io

algal-bacteria_co-occurences_data793

brazilian_supercorals_field

cbassvsclassic

Compared responses of coral holobiont to short term acute heat stress and long term heat stress

coral_deoxygenation_rnaseq

coral_endoliths

coral_microbiome_ontogeny

foam

script to run FOAM

light_pollution

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

red-sea-radseq

red_sea_virome

This repository contains the scripts used to analyze data and create figures for the manuscript “Coral-associated viral assemblages from the central Red Sea align with host species and contribute to the holobiont’s bacterial virulence”

rss_cbass_16s

Scripts for cDNA-based 16S rRNA amplicon data analysis of Stylophora pistillata in response to short-term (18 hours) and long-term (14 days) heat stress from the paper: "Fast and pervasive transcriptomic resilience and acclimation of extremely heat tolerant coral holobionts from the northern Red Sea"

tridacna_microbiome

Scripts and pipelines used for describing bacterial diversity in Tridacna.

vtk_2021

16S rRNA ASV analysis

vtk_2022