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ajmazurie.github.com

Landing page and curriculum vitae of Aurélien Mazurie, Ph.D.

beakerx_kernel_base

Base repository for BeakerX JVM based kernels

biofabric

Python implementation of the BioFabric network visualization technique

callysto

Create domain-specific kernels for the Jupyter platform by extending a Python class.

callysto-examples

Example Jupyter kernels built on top of the Callysto framework

haystack

kegg-animate-pathway

Command-line utility to color objects of a KEGG pathway with arbitrary colors

oh-my-dir

Per-project environments for Conda, Julia, Perl, Python, Rust, and more

spate

Lightweight Python API for workflow composition and generation

xbio.semanticdistance

This Python library provides a method to calculate a distance between terms in an ontology.

xstats.enrichment

enrichment (subset of the xstats package) is a Python library providing two methods to perform enrichment analysis, such as gene set enrichment analysis in bioinformatics

xstats.mine

Python wrapper for the Java-based Maximal Information-based Nonparametric Exploration (MINE) statistics library

xstats.padjust

padjust (subset of the xstats package) is a Python library to correct p-values for multiple testing

xweka

Set of command-line tools to automatize the use of the WEKA machine learning toolkit (see README)