genome_fetcher.py error about dajin2

[takeiga]

Our control sequence data is derived from the latest version of NCBI's Xenopus laevis reference genome (Xenopus_laevis_v10.1). But I used old ref genome, UCSC's xenLae2 for DAJIN2 prerequisite and those two different version of the genome contains nucleotide differences. So I understood the reason why the genome_fetcher.py showed error and will use UCSC's data if needed.
I personally hope we can use NCBI data for reference data in further update of DAJIN2 if possible.

[akikuno]

I appreciate your reports!

As you mentioned, I've updated genome_fetcher.py to ensure a perfect match between the control sequence and its reference. Consequently, there's a possibility that your control sequence in actc1L_cont_knockin.fa might not align with the reference. Could you possibly share your control sequence in actc1L_cont_knockin.fa? I'd like to examine the cause of error using your control sequence if possible.

I confirmed run completed successfully when I replaced older genome_fetcher.py, so it may come from updated one.

I am pleased to hear this. Your feedback is greatly appreciated! Thank you for your valuable contribution.

[akikuno]

Thank you for your description!
I'll rethink the method for obtaining genome coordinates.
It might take some time, but I'll share the information here once it's updated.