aknijn Goto Github PK
Name: Arnold Knijn
Type: User
Company: Istituto Superiore di Sanità
Location: Rome, Italy
Arnold Knijn's Projects
chewbbaca-galaxy
Galaxy wrapper for the chewBBACA BSR-Based Allele Calling Algorithm
discover
DiSCoVeR project’s pipeline
eurl_vtec_wgs_pt-galaxy
This tool performs various Escherichia coli typing tools
influenza-galaxy
Pipeline for IRIDA-PLUS
irida
Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
irida-aries
pangolin-galaxy
Galaxy wrapper for the pangolin tool
phantastic-galaxy
An automated analysis pipeline PHANtAsTiC: Public Health Analysis of Nucleotides through Assembly, Typing and Clustering
recovery-galaxy
A user-friendly and sequencing platform-independent bioinformatics pipeline to build SARS-CoV-2 complete genomes from raw sequencing reads and to investigate variants. The pipeline is implemented as a Galaxy (https://galaxyproject.org/) workflow.
sars-cov-2-recovery
A user-friendly and sequencing platform-independent bioinformatics pipeline to build SARS-CoV-2 complete genomes from raw sequencing reads and to investigate variants. Integrated in a combined Galaxy and IRIDA infrastructure.
shigatoxin-galaxy
This tool performs Shiga toxin sub-typing of Escherichia coli
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