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abcml

Analysis of bone counts by maximum likelihood

agar22

AGAR Workshop, 2022

altai

README files associated with data from Prufer et al paper on Altai Neanderthal genome

ape

Ape reference sequences

arrbib

Alan Rogers's BibTeX data base.

bedvcf

Filter out intervals of a vcf file, as specified in a bed file.

covld

Estimate linkage disequilibrium between unphased loci

denisova

README files associated with data from Meyer et al paper on high-coverage Denisovan genome

dtnorm

Random samples from a doubly-truncated Normal distribution.

eghop

Evolutionary genetics of humans and other primates: a journal club

famhist

My Family History

hg19

Human reference genome version hg19

hka

Hudson-Kaplan-Aguade test

jobqueue

Multithreaded job queue in C, using pthreads.

ldpsiz

Ldpsiz is a computer package that estimates the history of population size from data on linkage disequilibrium (LD).

legofit

Estimate population history parameters from site pattern frequencies.

matrixcoalescent.jl

Calculations on a Markov chain representing the coalescent process of population genetics.

mismatch

Analysis of mismatch distributions: code from the 1990s. Caveat emptor.

mktree

Simulate a coalescent tree and write it in PicTeX format.

pgen

Population genetics group, Sprint 2021

rtnormc

Random samples from a doubly-truncated Normal distribution.

sasimplex

simons

README and code associated with data from Simons Genome Diversity Project

simons-scripts

Slurm scripts for processing data from the Simons Genome Diversity Project.

ternplot

Ternary plot in PicTeX

toymetro

Tiny example of a Metropolis-Hastings sampler.

vindija

Files associated with high-res genome of Vindija Neanderthal