Comments (3)
Hi,
You need to use "a" as input instead of "PD3851a".
Thanks
from sigprofilerextractor.
Hi,
You need to use "a" as input instead of "PD3851a".Thanks
OK,thanks,I get it .But do you know how to use cosmic signatures to indicate the mutation matrix, and do not need to extract new signatures ?
from sigprofilerextractor.
you can use SigProfilerSingleSample for that purpose:
https://github.com/AlexandrovLab/SigProfilerSingleSample.git
from sigprofilerextractor.
Related Issues (20)
- SBS384 extraction problem HOT 5
- Strategies to improve cosine similarity per sample HOT 1
- error because of new pandas version HOT 1
- Minimum number of mutations or genome length. HOT 1
- Custom opportunities matrix HOT 8
- AttributeError: 'NoneType' object has no attribute 'keys (decomposition.py error) HOT 2
- Infinite loop HOT 1
- Issue with install HOT 2
- ValueError: operands could not be broadcast together with shapes (83,0) (0,0) HOT 3
- Sample filtering before extraction HOT 1
- question about the SigProfilerExtractor HOT 1
- Singularity container creation HOT 5
- Denovo Signature and Assigning Signature Matching Error HOT 1
- Asking for SBS96 contexts in SigProfilerExtractor but receiving CH1000 HOT 1
- New issue with Indels HOT 7
- sigProfilerExtractor for ID(INDELS) HOT 5
- The difference between SBS96_De-Novo_Solution and COSMIC_SBS96_Decomposed_Solution. HOT 3
- IndexError occurred when processing directory /app/output: index out of range HOT 4
- AttributeError: 'NoneType' object has no attribute 'keys' HOT 3
- "Cannot reindex on an axis with duplicate labels"-Error HOT 1
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