Comments (5)
mishugeb
commented on June 9, 2024
Hi,
Please visit https://github.com/AlexandrovLab/SigProfilerSingleSample or https://pypi.org/project/sigproSS/ to learn how to fit COSMIC signatures to your samples without doing NMF.
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XuanYuXu
commented on June 9, 2024
Hi,
Please visit https://github.com/AlexandrovLab/SigProfilerSingleSample or https://pypi.org/project/sigproSS/ to learn how to fit COSMIC signatures to your samples without doing NMF.
Thanks,but the first website does not work...
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XuanYuXu
commented on June 9, 2024
Hi,
Please visit https://github.com/AlexandrovLab/SigProfilerSingleSample or https://pypi.org/project/sigproSS/ to learn how to fit COSMIC signatures to your samples without doing NMF.Thanks,but the first website does not work...
I got it ,but the type you input must be 'vcf'?Can it be 'matrix'?
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mishugeb
commented on June 9, 2024
Sorry, we don't support matrix since we need certain information from vcf to check the rules before fitting signatures.
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XuanYuXu
commented on June 9, 2024
OK,thanks anyway.
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Related Issues (20)
- Infinite loop HOT 1
- Issue with install HOT 2
- ValueError: operands could not be broadcast together with shapes (83,0) (0,0) HOT 3
- Sample filtering before extraction HOT 1
- question about the SigProfilerExtractor HOT 1
- Singularity container creation HOT 5
- Denovo Signature and Assigning Signature Matching Error HOT 1
- Asking for SBS96 contexts in SigProfilerExtractor but receiving CH1000 HOT 1
- New issue with Indels HOT 7
- sigProfilerExtractor for ID(INDELS) HOT 5
- The difference between SBS96_De-Novo_Solution and COSMIC_SBS96_Decomposed_Solution. HOT 3
- IndexError occurred when processing directory /app/output: index out of range HOT 4
- AttributeError: 'NoneType' object has no attribute 'keys' HOT 3
- "Cannot reindex on an axis with duplicate labels"-Error HOT 1
- index error may be caused by non-standard fields or variant type HOT 1
- CPU usage and GPU usage too little, and parameters don't take effect HOT 1
- CPU usage and GPU usage too little HOT 14
- Changelog HOT 1
- Decomposing De Novo Signatures HOT 2
- user defined H_initials and W_initials HOT 2
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