Comments (2)
alexdobin
commented on June 25, 2024
Hi,
this is an old issue with small genomes in STAR, please see the following post:
https://groups.google.com/forum/#!msg/rna-star/vNB4_I1FU2k/RcWqPRrXxj4J
If you use --genomeSAindexNbases 5 at the genome generation step, the error at the mapping stage should disappear.
Cheers
Alex
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tdido
commented on June 25, 2024
Ah, I see. Thanks for the reference. Is the mailing list the best place to try and track open bugs, or do you use some other tracker?
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