Comments (1)
Hi Emmanouil,
thanks a lot for reporting this bug, took me a long time to fix it. It was caused by sparse suffix array. Please check the patch on github master.
Cheers
Alex
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Related Issues (20)
- Gene IDs that does not exist in GTF appears in the count matrix HOT 1
- bam file missing barcode and UMI info HOT 2
- No filtered directory after running STARsolo with 10x v3 data HOT 2
- number of bytes expected from the BAM bin does not agree with the actual size on disk HOT 1
- The mapping results for reads exhibit significant discrepancies between Sentieon STAR and UCSC Blat. HOT 1
- sorting Transcriptome BAM HOT 1
- Infinite loop in Genome::genomeGenerate following I/O error HOT 1
- FATAL ERROR in reads input: quality string length is not equal to sequence length
- Segmentation Fault with STARsolo on Large scRNAseq Dataset HOT 2
- Creating multimapping matrix after alignment
- --soloUMIdedup Exact or NoDedup for SMART-seq2 data when using STAR-solo
- Reads assigned to intergenic regions after mapping paired-end reads with cDNA on Read 1
- Try to align library prepared using the Chromium Single Cell 3' v2 and v3 Reagent Kit,
- STARsolo running result shows nReadPerCBmax=0 (with bam files as input)
- Multimapping of a single read in terms of both correct and mismatched alignments. HOT 2
- STAR diploid transform for insertions
- Generate Chimeric.out.junction using peOverlapNbasesMin
- STAR multi-alignment?
- feature request: STAR polyploid?
- STARsolo doesn't generate filtered folder
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