Name: Alex Holehouse
Type: User
Company: Washington University School of Medicine
Bio: Assistant Professor of Biophysics @ Washington University School of Medicine - we study how function is encoded into intrinsically disordered protein regions.
Location: Saint Louis, MO
Blog: http://holehouse.wustl.edu
Alex Holehouse's Projects
Make header and class files using a default template. Save ~ 1 min per class...
Wrapper around PBS/SGE type queuing systems to automatically resubmit jobs
Collection of bioinformatics tools
Integrating Molecular Simulation and Experimental Data
Generalized implementation of CAMeLot
My command line interface tools for python projects
The most widely used Python to C compiler
Modeling molecular ensembles with scalable data structures and parallel computing
Simple base-type based API for the NCBI databases
Public/backup repository of the gromacs molecular simulation toolkit
Software tools to analyze data produced from the L1000 project
Part of my dissertation project, a selection of MATLAB scripts for generating and evaluating parameters based on empirical data originally collected by Hendriks et al. This is NOT GENERIC, but specific for a project
A modern, open library for the analysis of molecular dynamics trajectories
molssi 2019 tutorial
Package for 2019 workshop!
Material from papers from KULL centre
Take a PDB file and spit out protein sequence in 3 or 1 letter format
Robust parsing API for PDB files
Python API to access ProteomeScout flatfiles [proteomescout.wustl.edu]
psfmi: Predictor Selection Functions for Logistic and Cox regression models in multiply imputed datasets
Super simple, super lightweight dna compression tool
Python wrapper around the aggregation propensity prediction tool TANGO for Linux usage
Python script used to identify RS-rich domains
SBML model editor and integrator - *very* much in alpha
Official repository for the ShanEnt analysis package
▁▂▃▅▂▇ in your shell.
stackedBarGraph
General system tools
Collection of Python command line tools for exploring and describing Fortran code