alexmsalmeida Goto Github PK
Name: Alexandre Almeida
Type: User
Company: University of Cambridge
Twitter: alexmsalmeida
Location: Cambridge, UK
Alexandre Almeida's Projects
amr-profiler
Snakemake workflow to characterize the presence and abundance of antibiotic resistance genes in metagenomic datasets.
genofan
Workflow for functional annotation of a set of bacterial genomes
gubascreen
Protocol for detecting Gubaphage genomes among a set of predicted viral sequences
lab-website-template
(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
latinbiota
Central repository with scripts and workflows for the analysis of the gut microbiome of the Latinbiota cohort
magscreen
Snakemake workflow to screen a set of genomes (e.g., MAGs) against an existing genome database and identify novel species
metagen-fastqc
Wrapper to clean metagenomic reads
metamap
Snakemake workflow to map and quantify microbial genomes in metagenomic reads
ml-microbiome
Snakemake workflow to perform machine learning classification of microbiome sequence data
protean
Workflow for functional annotation of large collections of protein sequences
tax-benchmarking
Benchmarking taxonomic analysis tools and databases.
virsearch
Snakemake workflow to detect and classify viruses in metagenome assemblies.
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