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alexpiper

Repository for the personal website of Alexander M Piper

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Alexander M Piper's Projects

afdscraper icon afdscraper

An R package for scraping data from the Australian Faunal Directory

cv icon cv

CV for Alexander Piper

drosophila_metabarcoding icon drosophila_metabarcoding

Reproducible analysis for the paper: "DNA Metabarcoding Enables High-Throughput Detection of Spotted Wing Drosophila (Drosophila suzukii) Within Unsorted Trap Catches"

imappests icon imappests

Bioinformatic workflow for analysing metabarcoding data from the iMapPESTS project

locator icon locator

deep learning prediction of geographic location from individual genome sequences

metabarcodereviewms icon metabarcodereviewms

Repository for manuscript "Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance"

metabrowser icon metabrowser

A shiny app for browsing and reporting metabarcoding data

piperline icon piperline

A targets based metabarcoding pipeline implemented in R

seqateurs icon seqateurs

Tools for trimming and processing sequence data

seqscope icon seqscope

Shiny app for viewing metabarcoding results

taxreturn icon taxreturn

An R package for creating taxonomic reference databases for metabarcoding studies

utility icon utility

Useful bash one-liners for bioinformatics.

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