Comments (3)
@allyhawkins If there are any other issues that you think might block this release, please let me know in a comment and/or add them as dependencies above!
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I think this looks good and that we are good for the new release once we have #87 merged.
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Done! https://github.com/AlexsLemonade/scpca-nf/releases/tag/v0.2.0
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Related Issues (20)
- Ideas for reducing file sizes HOT 6
- Add is_xenograft & is_cell_line to example metadata HOT 6
- Create nextflow_schema.json file HOT 1
- Include instructions for specifying `merge_run_ids` when merging projects in external instructions
- Skip creation of merged objects HOT 1
- Fix column name typos HOT 4
- Future idea: Create merged objects for projects with multiplexed libraries containing all non-multiplexed single-cell libraries
- Prepare for scpca-nf release v0.7.3
- Make sure CellAssign is skipped for any objects with just 1 cell HOT 1
- [BUG] Age in sample_metadata is inconsistently typed HOT 3
- Discussion: Rename AnnData objects with .h5ad extension HOT 6
- [BUG] Account for grabbing estimated demux cell counts for libraries with no genetic demultiplexing HOT 1
- `project_celltype_metafile` parameter is missing from scpca-nf schema
- Test workflow with Bioc3.19 images HOT 1
- Use more specialized docker images for processes HOT 2
- Prepare for scpca-nf release `v0.8.1`
- Consider using nf-schema plugin to validate inputs
- Use new smaller images in processes HOT 1
- Test use of smaller Docker images in workflow HOT 1
- Re-order bulk metadata to match order for overall sample metadata HOT 1
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