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Alex Kramer's Projects

hack-davis-2019 icon hack-davis-2019

HackDavis entry: Research Portal - a website to connect undergraduates interested in research with the appropriate faculty, and vice versa

keep-scrolling icon keep-scrolling

Google Chrome extension that keeps track of how many miles you have scrolled.

latawcapstone icon latawcapstone

English Capstone project - an algorithmic analysis of the writings of James Fenimore Cooper

led-visualizer-thing icon led-visualizer-thing

Two-fold visualization program for an LED strip. Displays computer screen's average color, and adjusts brightness according to audio output.

lsd2 icon lsd2

A phylogeny dating method using least-squares algorithms and criteria

lua-hmm icon lua-hmm

A proof-of-concept n-order Hidden Markov Model with Viterbi decoding, implemented in Lua

matreepy icon matreepy

Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit (In Development)

mkmh icon mkmh

Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.

ml-iris icon ml-iris

Very simple machine learning test, classifying Iris flowers into one of two classses

musescore icon musescore

MuseScore is an open source and free music notation software. For support, contribution, bug reports, visit MuseScore.org. Fork and make pull requests!

nextclade icon nextclade

Viral genome alignment, clade assignment, mutation calling, and quality checks

p4-guide icon p4-guide

Guide to p4lang repositories and some other public info about P4

panmap icon panmap

🧬 🌲 A phylo-pangenomic sequence assembler and genotype likelihood estimator. Read mapping guided by evolution with tree pangenomes.

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